Semi-synthetic Approaches to N-Glycosylation: A Story of Thiol-Ene Methodology, and Interferon-γ
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Lynch, Dylan, Semi-synthetic Approaches to N-Glycosylation: A Story of Thiol-Ene Methodology, and Interferon-γ;, Trinity College Dublin.School of Chemistry, 2022Download Item:
Abstract:
The following thesis, entitled “Semi-synthetic Approaches to N-Glycosylation: A Story
of Thiol-Ene Methodology, and Interferon-γ” is composed of six chapters. The first
chapter provides an overview of the key concepts that underpin the present work. An
outline of post-translation modifications, with a focus on glycosylation, is discussed. The
synthetic methods for accessing N-glycopeptides are thoroughly reviewed, with a
highlight on radical methods that foreshadows the chapters to come. Bioconjugation and
two important ‘click’ reactions are discussed, as is Interferon-γ – a hugely important
protein which is central to this work. The thiol-ene reaction is examined in terms of
mechanistic detail and versatility, as well as the behaviour of thiyl radicals in their
addition to alkenes and alkynes. Finally, the research questions of each forthcoming
chapter are posed, with clear aims set out.
The first part of this work, Chapter Two, investigates the use of carbohydrate moieties as
molecular scaffolds for N-glycopeptide synthesis. A number of S-trityl thioesters are
prepared, and reacted with two highly functionalised N-acetyl-D-glucosamines. The
propensity of these systems to allow S-to-N acyl transfer is investigated, and a number
of anomeric amides are prepared. The mechanistic detail of this reaction is thoroughly
analysed, and overall an interesting synthetic methodology is depicted.
In Chapter Three, the semi-synthesis of Interferon-γ is described. The incorporation of a
non-natural amino acid into the polypeptide backbone is investigated, as well as the
bioconjugation of a large mammalian glycan via ‘click’ chemistry. This route is intended
to provide access to glycosylated, refolded Interferon-γ in its natural dimeric form. An
in-depth analysis of the purification steps, trials and tribulations associated with
recombinant protein expression, and future work is discussed in this chapter.
Chapter Four introduces a thiol-ene mediated radical methodology for the cyclisation of
unsaturated substrates. A serendipitously discovery in the course of supervising an
undergraduate researcher is fully investigated in terms of scope, limitations, and utility.
A number of unsaturated substrates are prepared, and a diverse array of thioacids are
reacted with these materials. A blue-light photoreactor is constructed and investigated as
an even milder form of radical initiation, with a detailed analysis of the various visible
light photoinitiators that can be employed.
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In Chapter Five, two collaborative projects are discussed, that the author is deeply
grateful to have been part of. While these projects culminated in publications centering
on the biological properties of these compounds, this brief chapter illustrates the synthetic
protocols designed for their syntheses. The first of these projects involves the synthesis
of a number of rhamnosides, which were later used by our immunology collaborators in
studies regarding Mycobacterium tuberculosis. The second of these collaborations
involves the synthesis of a highly functionalised cytotoxic naphthalimides drug, linked
to a carbohydrate moiety via a ‘self-immolative linker’, which localises the drug release
to tumour tissue.
Finally, Chapter Six described the experimental details employed in the course of this
research work, and the characterisation of the compounds synthesised within this thesis.
A brief appendix, Appendix A, is available at the very end of this thesis, with some select
NMR spectra from Chapter Two that the reader may peruse.
Sponsor
Grant Number
Science Foundation Ireland (SFI)
Description:
APPROVED
Author: Lynch, Dylan
Advisor:
Scanlan, EoinPublisher:
Trinity College Dublin. School of Chemistry. Discipline of ChemistryType of material:
ThesisAvailability:
Full text availableKeywords:
radical, glycoscience, thiol-ene, thiyl radicals, interferonMetadata
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