Show simple item record

dc.contributor.authorFARES, MARIOen
dc.date.accessioned2014-12-19T13:47:12Z
dc.date.available2014-12-19T13:47:12Z
dc.date.issued2013en
dc.date.submitted2013en
dc.identifier.citationSablok G, Mudunuri SB, Patnana S, Popova M, Fares MA, Porta NL, ChloroMitoSSRDB: open source repository of perfect and imperfect repeats in organelle genomes for evolutionary genomics., DNA research : an international journal for rapid publication of reports on genes and genomes, 20, 2, 2013, 127-33en
dc.identifier.issn1340-2838en
dc.identifier.otherYen
dc.identifier.urihttp://hdl.handle.net/2262/72732
dc.descriptionPUBLISHEDen
dc.description.abstractMicrosatellites or simple sequence repeats (SSRs) are repetitive stretches of nucleotides (A, T, G, C) that are distributed either as single base pair stretches or as a combination of two- to six-nucleotides units that are non-randomly distributed within coding and in non-coding regions of the genome. ChloroMitoSSRDB is a complete curated web-oriented relational database of perfect and imperfect repeats in organelle genomes. The present version of the database contains perfect and imperfect SSRs of 2161 organelle genomes (1982 mitochondrial and 179 chloroplast genomes). We detected a total of 5838 chloroplast perfect SSRs, 37 297 chloroplast imperfect SSRs, 5898 mitochondrial perfect SSRs and 50 355 mitochondrial imperfect SSRs across these genomes. The repeats have been further hyperlinked to the annotated gene regions (coding or non-coding) and a link to the corresponding gene record in National Center for Biotechnology Information(www.ncbi.nlm.nih.gov/) to identify and understand the positional relationship of the repetitive tracts. ChloroMitoSSRDB is connected to a user-friendly web interface that provides useful information associated with the location of the repeats (coding and non-coding), size of repeat, motif and length polymorphism, etc. ChloroMitoSSRDB will serve as a repository for developing functional markers for molecular phylogenetics, estimating molecular variation across species. Database URL: ChloroMitoSSRDB can be accessed as an open source repository at www.mcr.org.in/chloromitossrdb.en
dc.format.extent127-33en
dc.language.isoenen
dc.relation.ispartofseriesDNA research : an international journal for rapid publication of reports on genes and genomesen
dc.relation.ispartofseries20en
dc.relation.ispartofseries2en
dc.rightsYen
dc.subjectGeneticsen
dc.titleChloroMitoSSRDB: open source repository of perfect and imperfect repeats in organelle genomes for evolutionary genomics.en
dc.typeJournal Articleen
dc.type.supercollectionscholarly_publicationsen
dc.type.supercollectionrefereed_publicationsen
dc.identifier.peoplefinderurlhttp://people.tcd.ie/faresmen
dc.identifier.rssinternalid98449en
dc.identifier.doihttp://dx.doi.org/10.1093/dnares/dss038en
dc.rights.ecaccessrightsopenAccess


Files in this item

Thumbnail

This item appears in the following Collection(s)

Show simple item record